PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008156.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 258aa    MW: 28658.6 Da    PI: 6.1493
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008156.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.71.1e-55791821101
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi
  CCG008156.1  79 QLQTFWANQyqeIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 176
                  89******99999************************************************************************************* PP

        NF-YC  96 vprdel 101
                  vpr++l
  CCG008156.1 177 VPREDL 182
                  ***987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.54E-3368173IPR009072Histone-fold
PfamPF008081.6E-21101164IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-37102179IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDQQGHGQPP TVGMIGRTAP VPCGMASYQP NQMMGPSAAG SVQSPAQPAV LAAASAQLAQ  60
HQLAYQHIHQ QQQQQLLQQL QTFWANQYQE IEQTADFKNH SLPLARIKKI MKADEDVRMI  120
SAEAPVIFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE  180
DLKDEVLASV PRGSLPVGGP PDALPYYYMP HQLAPQVSAP GMTVGKPVVD QSLYGQQSRP  240
YVAQQIWPQQ TLQPPEDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C4e-41651794119HapE
4g92_C4e-41651794119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RRTLQKN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2158490.0AC215849.1 Populus trichocarpa clone POP023-L07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011728.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_011011729.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_011011730.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X2
RefseqXP_011014290.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_011014291.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_011014292.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X2
SwissprotQ8L4B28e-82NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLU5G1090.0U5G109_POPTR; Uncharacterized protein
STRINGPOPTR_0010s03730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.43e-80nuclear factor Y, subunit C9